SNP Profiles matching MARPER 37

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	GG	AG	CT	GG	AA	CC	CC	GG	CC	AA	GG	TT	CC
1._RUQ_1089	TT	GG	AG	CT	GG	AA	CC	CC	GG	CC	AA	GG	_	CC
2._RUQ_1230	_	GG	AG	CT	_	AA	CC	CT	GG	CC	_	GG	_	CC
3._RUQ_1577	_	GG	AG	CT	_	AA	CC	CT	GG	CT	_	GG	_	CC
4._RUQ_1304	_	GG	AG	CT	_	AA	CC	CC	GG	CT	_	GG	_	CC
5._GU_255_/P	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
6._GU_255_/P	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
7._GU_255_/P	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
8._GU_255_/P	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
9._GU_255_/P	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
10._NA_168	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
11._NA_168	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
12._NA_168	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
13._NA_168	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
14._NA_168	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
15._NA_168	TT	GG	AG	CT	GG	AG	CC	CC	GG	CC	AA	GG	_	CT
16._NA_670	TT	GG	AG	CC	GG	AA	CC	CT	GG	CC	AA	GG	_	CC
17._NA_670	TT	GG	AG	CC	GG	AA	CC	CT	GG	CC	AA	GG	_	CC
18._NA_670	TT	GG	AG	CC	GG	AA	CC	CT	GG	CC	AA	GG	_	CC
19._NA_670	TT	GG	AG	CC	GG	AA	CC	CT	GG	CC	AA	GG	_	CC
20._RUQ_1238	TT	GG	AG	CC	GG	AA	CC	CT	GG	CC	AA	GG	_	CC
21._NA_670	TT	GG	AG	CC	GG	AA	CC	CT	GG	CC	AA	GG	_	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27
_Input profile	GG	AT	TT	AG	AG	AA	CC	TT	AA	TT	CC	AA	CC	X_X
1._RUQ_1089	GG	AT	TT	AG	AG	AA	CC	TT	AC	TT	CC	AG	CC	X_X
2._RUQ_1230	_	_	_	AG	_	_	_	_	_	TT	CG	AA	_	X_X
3._RUQ_1577	_	_	_	AG	_	_	_	_	_	TT	CC	AA	_	X_X
4._RUQ_1304	_	_	_	AG	_	_	_	_	_	TT	CC	AG	_	X_X
5._GU_255_/P	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
6._GU_255_/P	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
7._GU_255_/P	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
8._GU_255_/P	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
9._GU_255_/P	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
10._NA_168	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
11._NA_168	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
12._NA_168	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
13._NA_168	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
14._NA_168	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
15._NA_168	GG	AT	TT	AG	GG	AA	CC	TT	AA	TT	CG	AA	CC	X_X
16._NA_670	GG	AA	TT	AG	AG	AA	CT	TT	AA	TT	CC	AG	CC	X_X
17._NA_670	GG	AA	TT	AG	AG	AA	CT	TT	AA	TT	CC	AG	CC	X_X
18._NA_670	GG	AA	TT	AG	AG	AA	CT	TT	AA	TT	CC	AG	CC	X_X
19._NA_670	GG	AA	TT	AG	AG	AA	CT	TT	AA	TT	CC	AG	CC	X_X
20._RUQ_1238	GG	AA	TT	AG	AG	AA	CT	TT	AA	TT	CC	AG	CC	X_X
21._NA_670	GG	AA	TT	AG	AG	AA	CT	TT	AA	TT	CC	AG	CC	X_X

Input profile: MARPER_37

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 661

Dapeng Zhang, 2014

1._ICS_39 RUQ_1089

96.2 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._NA_26 RUQ_1230

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._NA_33 RUQ_1577

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PNG_340 RUQ_1304

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._GU_255_/P

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 9

Dapeng Zhang, 2016

6._GU_255_/P

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 6

Dapeng Zhang, 2016

7._GU_255_/P

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 4

Dapeng Zhang, 2016

8._GU_255_/P

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 3

Dapeng Zhang, 2016

9._GU_255_/P

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 1

Dapeng Zhang, 2016

10._NA_168

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 6 > FP

Dapeng Zhang, 2016

11._NA_168

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 4 > FP

Dapeng Zhang, 2016

12._NA_168

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 3 > FP

Dapeng Zhang, 2016

13._NA_168

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 1 > FP

Dapeng Zhang, 2016

14._NA_168

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 12

Dapeng Zhang, 2016

15._NA_168

92.3 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._NA_670

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 5 > FP

Dapeng Zhang, 2016

17._NA_670

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 4 > FP

Dapeng Zhang, 2016

18._NA_670

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 3 > FP

Dapeng Zhang, 2016

19._NA_670

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 2 > FP

Dapeng Zhang, 2016

20._NA_670 RUQ_1238

90.4 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

21._NA_670

90.4 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D317 T4

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP32	2	TcSNP150	3	TcSNP230	4	TcSNP242	5	TcSNP429
6	TcSNP469	7	TcSNP529	8	TcSNP534	9	TcSNP577	10	TcSNP619
11	TcSNP645	12	TcSNP723	13	TcSNP836	14	TcSNP891	15	TcSNP929
16	TcSNP953	17	TcSNP994	18	TcSNP998	19	TcSNP1062	20	TcSNP1075
21	TcSNP1165	22	TcSNP1270	23	TcSNP1350	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP1520